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FigShare changes all '-' to '_' in filenames

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Chris Kerr
2014-11-08 11:26:43 +00:00
parent 6973fc4e5c
commit ae2b263989
2 changed files with 24 additions and 23 deletions
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1
get_testdata.sh
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@@ -3,6 +3,7 @@
## Test data are posted on FigShare, listed in this article ## Test data are posted on FigShare, listed in this article
# http://figshare.com/articles/galvani_test_data/1228760 # http://figshare.com/articles/galvani_test_data/1228760
mkdir -p tests/testdata
cd tests/testdata cd tests/testdata
/usr/bin/wget -i - <<END_FILELIST /usr/bin/wget -i - <<END_FILELIST

46
tests/test_BioLogic.py
View File

@@ -15,7 +15,7 @@ testdata_dir = os.path.join(os.path.dirname(__file__), 'testdata')
def test_open_MPT(): def test_open_MPT():
mpt1, comments = MPTfile(os.path.join(testdata_dir, 'bio-logic1.mpt')) mpt1, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpt'))
eq_(comments, []) eq_(comments, [])
eq_(mpt1.dtype.names, ("mode", "ox/red", "error", "control changes", eq_(mpt1.dtype.names, ("mode", "ox/red", "error", "control changes",
"Ns changes", "counter inc.", "time/s", "Ns changes", "counter inc.", "time/s",
@@ -25,11 +25,11 @@ def test_open_MPT():
@raises(ValueError) @raises(ValueError)
def test_open_MPT_fails_for_bad_file(): def test_open_MPT_fails_for_bad_file():
mpt1 = MPTfile(os.path.join(testdata_dir, 'bio-logic1.mpr')) mpt1 = MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpr'))
def test_open_MPT_csv(): def test_open_MPT_csv():
mpt1, comments = MPTfileCSV(os.path.join(testdata_dir, 'bio-logic1.mpt')) mpt1, comments = MPTfileCSV(os.path.join(testdata_dir, 'bio_logic1.mpt'))
eq_(comments, []) eq_(comments, [])
eq_(mpt1.fieldnames, ["mode", "ox/red", "error", "control changes", eq_(mpt1.fieldnames, ["mode", "ox/red", "error", "control changes",
"Ns changes", "counter inc.", "time/s", "Ns changes", "counter inc.", "time/s",
@@ -39,46 +39,46 @@ def test_open_MPT_csv():
@raises(ValueError) @raises(ValueError)
def test_open_MPT_csv_fails_for_bad_file(): def test_open_MPT_csv_fails_for_bad_file():
mpt1 = MPTfileCSV(os.path.join(testdata_dir, 'bio-logic1.mpr')) mpt1 = MPTfileCSV(os.path.join(testdata_dir, 'bio_logic1.mpr'))
def test_open_MPR1(): def test_open_MPR1():
mpr1 = MPRfile(os.path.join(testdata_dir, 'bio-logic1.mpr')) mpr1 = MPRfile(os.path.join(testdata_dir, 'bio_logic1.mpr'))
## Check the dates as a basic test that it has been read properly ## Check the dates as a basic test that it has been read properly
eq_(mpr1.startdate, date(2011, 10, 29)) eq_(mpr1.startdate, date(2011, 10, 29))
eq_(mpr1.enddate, date(2011, 10, 31)) eq_(mpr1.enddate, date(2011, 10, 31))
def test_open_MPR2(): def test_open_MPR2():
mpr2 = MPRfile(os.path.join(testdata_dir, 'bio-logic2.mpr')) mpr2 = MPRfile(os.path.join(testdata_dir, 'bio_logic2.mpr'))
## Check the dates as a basic test that it has been read properly ## Check the dates as a basic test that it has been read properly
eq_(mpr2.startdate, date(2012, 9, 27)) eq_(mpr2.startdate, date(2012, 9, 27))
eq_(mpr2.enddate, date(2012, 9, 27)) eq_(mpr2.enddate, date(2012, 9, 27))
def test_open_MPR3(): def test_open_MPR3():
mpr = MPRfile(os.path.join(testdata_dir, 'bio-logic3.mpr')) mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic3.mpr'))
## Check the dates as a basic test that it has been read properly ## Check the dates as a basic test that it has been read properly
eq_(mpr.startdate, date(2013, 3, 27)) eq_(mpr.startdate, date(2013, 3, 27))
eq_(mpr.enddate, date(2013, 3, 27)) eq_(mpr.enddate, date(2013, 3, 27))
def test_open_MPR4(): def test_open_MPR4():
mpr = MPRfile(os.path.join(testdata_dir, 'bio-logic4.mpr')) mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic4.mpr'))
## Check the dates as a basic test that it has been read properly ## Check the dates as a basic test that it has been read properly
eq_(mpr.startdate, date(2011, 11, 1)) eq_(mpr.startdate, date(2011, 11, 1))
eq_(mpr.enddate, date(2011, 11, 2)) eq_(mpr.enddate, date(2011, 11, 2))
def test_open_MPR5(): def test_open_MPR5():
mpr = MPRfile(os.path.join(testdata_dir, 'bio-logic5.mpr')) mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic5.mpr'))
## Check the dates as a basic test that it has been read properly ## Check the dates as a basic test that it has been read properly
eq_(mpr.startdate, date(2013, 1, 28)) eq_(mpr.startdate, date(2013, 1, 28))
eq_(mpr.enddate, date(2013, 1, 28)) eq_(mpr.enddate, date(2013, 1, 28))
def test_open_MPR6(): def test_open_MPR6():
mpr = MPRfile(os.path.join(testdata_dir, 'bio-logic6.mpr')) mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic6.mpr'))
## Check the dates as a basic test that it has been read properly ## Check the dates as a basic test that it has been read properly
eq_(mpr.startdate, date(2012, 9, 11)) eq_(mpr.startdate, date(2012, 9, 11))
## no end date because no VMP LOG module ## no end date because no VMP LOG module
@@ -145,37 +145,37 @@ def assert_MPR_matches_MPT(mpr, mpt, comments):
def test_MPR1_matches_MPT1(): def test_MPR1_matches_MPT1():
mpr1 = MPRfile(os.path.join(testdata_dir, 'bio-logic1.mpr')) mpr1 = MPRfile(os.path.join(testdata_dir, 'bio_logic1.mpr'))
mpt1, comments = MPTfile(os.path.join(testdata_dir, 'bio-logic1.mpt')) mpt1, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpt'))
assert_MPR_matches_MPT(mpr1, mpt1, comments) assert_MPR_matches_MPT(mpr1, mpt1, comments)
def test_MPR2_matches_MPT2(): def test_MPR2_matches_MPT2():
mpr2 = MPRfile(os.path.join(testdata_dir, 'bio-logic2.mpr')) mpr2 = MPRfile(os.path.join(testdata_dir, 'bio_logic2.mpr'))
mpt2, comments = MPTfile(os.path.join(testdata_dir, 'bio-logic2.mpt')) mpt2, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic2.mpt'))
assert_MPR_matches_MPT(mpr2, mpt2, comments) assert_MPR_matches_MPT(mpr2, mpt2, comments)
## No bio-logic3.mpt file ## No bio_logic3.mpt file
def test_MPR4_matches_MPT4(): def test_MPR4_matches_MPT4():
mpr4 = MPRfile(os.path.join(testdata_dir, 'bio-logic4.mpr')) mpr4 = MPRfile(os.path.join(testdata_dir, 'bio_logic4.mpr'))
mpt4, comments = MPTfile(os.path.join(testdata_dir, 'bio-logic4.mpt')) mpt4, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic4.mpt'))
assert_MPR_matches_MPT(mpr4, mpt4, comments) assert_MPR_matches_MPT(mpr4, mpt4, comments)
def test_MPR5_matches_MPT5(): def test_MPR5_matches_MPT5():
mpr = MPRfile(os.path.join(testdata_dir, 'bio-logic5.mpr')) mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic5.mpr'))
mpt, comments = MPTfile((re.sub(b'\tXXX\t', b'\t0\t', line) for line in mpt, comments = MPTfile((re.sub(b'\tXXX\t', b'\t0\t', line) for line in
open(os.path.join(testdata_dir, 'bio-logic5.mpt'), open(os.path.join(testdata_dir, 'bio_logic5.mpt'),
mode='rb'))) mode='rb')))
assert_MPR_matches_MPT(mpr, mpt, comments) assert_MPR_matches_MPT(mpr, mpt, comments)
def test_MPR6_matches_MPT6(): def test_MPR6_matches_MPT6():
mpr = MPRfile(os.path.join(testdata_dir, 'bio-logic6.mpr')) mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic6.mpr'))
mpt, comments = MPTfile(os.path.join(testdata_dir, 'bio-logic6.mpt')) mpt, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic6.mpt'))
mpr.data = mpr.data[:958] # .mpt file is incomplete mpr.data = mpr.data[:958] # .mpt file is incomplete
assert_MPR_matches_MPT(mpr, mpt, comments) assert_MPR_matches_MPT(mpr, mpt, comments)
@@ -190,6 +190,6 @@ def test_CV_C01():
def test_CA_455nm(): def test_CA_455nm():
mpr = MPRfile(os.path.join(testdata_dir, '121-CA-455nm-6V_30min_C01.mpr')) mpr = MPRfile(os.path.join(testdata_dir, '121_CA_455nm_6V_30min_C01.mpr'))
mpt, comments = MPTfile(os.path.join(testdata_dir, '121-CA-455nm-6V_30min_C01.mpt')) mpt, comments = MPTfile(os.path.join(testdata_dir, '121_CA_455nm_6V_30min_C01.mpt'))
assert_MPR_matches_MPT(mpr, mpt, comments) assert_MPR_matches_MPT(mpr, mpt, comments)