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synced 2025-12-14 01:15:34 +00:00
Use a pytest fixture to locate the testdata directory
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11
tests/conftest.py
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11
tests/conftest.py
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@@ -0,0 +1,11 @@
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"""Helpers for pytest tests."""
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import os
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import pytest
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@pytest.fixture(scope='session')
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def testdata_dir():
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"""Path to the testdata directory."""
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return os.path.join(os.path.dirname(__file__), 'testdata')
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@@ -11,10 +11,8 @@ import pytest
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from galvani import MPTfile, MPRfile
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from galvani import MPTfile, MPRfile
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from galvani.BioLogic import MPTfileCSV, str3 # not exported
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from galvani.BioLogic import MPTfileCSV, str3 # not exported
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testdata_dir = os.path.join(os.path.dirname(__file__), 'testdata')
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def test_open_MPT(testdata_dir):
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def test_open_MPT():
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mpt1, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpt'))
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mpt1, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpt'))
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assert comments == []
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assert comments == []
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assert mpt1.dtype.names == (
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assert mpt1.dtype.names == (
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@@ -24,12 +22,12 @@ def test_open_MPT():
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)
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)
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def test_open_MPT_fails_for_bad_file():
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def test_open_MPT_fails_for_bad_file(testdata_dir):
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with pytest.raises(ValueError, match='Bad first line'):
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with pytest.raises(ValueError, match='Bad first line'):
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MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpr'))
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MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpr'))
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def test_open_MPT_csv():
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def test_open_MPT_csv(testdata_dir):
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mpt1, comments = MPTfileCSV(os.path.join(testdata_dir, 'bio_logic1.mpt'))
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mpt1, comments = MPTfileCSV(os.path.join(testdata_dir, 'bio_logic1.mpt'))
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assert comments == []
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assert comments == []
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assert mpt1.fieldnames == [
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assert mpt1.fieldnames == [
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@@ -39,7 +37,7 @@ def test_open_MPT_csv():
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]
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]
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def test_open_MPT_csv_fails_for_bad_file():
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def test_open_MPT_csv_fails_for_bad_file(testdata_dir):
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with pytest.raises((ValueError, UnicodeDecodeError)):
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with pytest.raises((ValueError, UnicodeDecodeError)):
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MPTfileCSV(os.path.join(testdata_dir, 'bio_logic1.mpr'))
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MPTfileCSV(os.path.join(testdata_dir, 'bio_logic1.mpr'))
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@@ -55,7 +53,7 @@ def test_open_MPT_csv_fails_for_bad_file():
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# C019P-0ppb-A_C01.mpr stores the date in a different format
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# C019P-0ppb-A_C01.mpr stores the date in a different format
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('C019P-0ppb-A_C01.mpr', '2019-03-14', '2019-03-14'),
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('C019P-0ppb-A_C01.mpr', '2019-03-14', '2019-03-14'),
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])
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])
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def test_MPR_dates(filename, startdate, enddate):
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def test_MPR_dates(testdata_dir, filename, startdate, enddate):
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"""Check that the start and end dates in .mpr files are read correctly."""
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"""Check that the start and end dates in .mpr files are read correctly."""
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mpr = MPRfile(os.path.join(testdata_dir, filename))
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mpr = MPRfile(os.path.join(testdata_dir, filename))
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assert mpr.startdate.strftime('%Y-%m-%d') == startdate
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assert mpr.startdate.strftime('%Y-%m-%d') == startdate
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@@ -65,7 +63,7 @@ def test_MPR_dates(filename, startdate, enddate):
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assert not hasattr(mpr, 'enddate')
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assert not hasattr(mpr, 'enddate')
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def test_open_MPR_fails_for_bad_file():
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def test_open_MPR_fails_for_bad_file(testdata_dir):
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with pytest.raises(ValueError, match='Invalid magic for .mpr file'):
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with pytest.raises(ValueError, match='Invalid magic for .mpr file'):
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MPRfile(os.path.join(testdata_dir, 'arbin1.res'))
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MPRfile(os.path.join(testdata_dir, 'arbin1.res'))
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@@ -134,7 +132,7 @@ def assert_MPR_matches_MPT(mpr, mpt, comments):
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'CV_C01',
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'CV_C01',
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'121_CA_455nm_6V_30min_C01',
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'121_CA_455nm_6V_30min_C01',
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])
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])
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def test_MPR_matches_MPT(basename):
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def test_MPR_matches_MPT(testdata_dir, basename):
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"""Check the MPR parser against the MPT parser.
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"""Check the MPR parser against the MPT parser.
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Load a binary .mpr file and a text .mpt file which should contain
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Load a binary .mpr file and a text .mpt file which should contain
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@@ -147,7 +145,7 @@ def test_MPR_matches_MPT(basename):
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assert_MPR_matches_MPT(mpr, mpt, comments)
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assert_MPR_matches_MPT(mpr, mpt, comments)
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def test_MPR5_matches_MPT5():
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def test_MPR5_matches_MPT5(testdata_dir):
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mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic5.mpr'))
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mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic5.mpr'))
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mpt, comments = MPTfile((re.sub(b'\tXXX\t', b'\t0\t', line) for line in
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mpt, comments = MPTfile((re.sub(b'\tXXX\t', b'\t0\t', line) for line in
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open(os.path.join(testdata_dir, 'bio_logic5.mpt'),
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open(os.path.join(testdata_dir, 'bio_logic5.mpt'),
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@@ -155,7 +153,7 @@ def test_MPR5_matches_MPT5():
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assert_MPR_matches_MPT(mpr, mpt, comments)
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assert_MPR_matches_MPT(mpr, mpt, comments)
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def test_MPR6_matches_MPT6():
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def test_MPR6_matches_MPT6(testdata_dir):
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mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic6.mpr'))
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mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic6.mpr'))
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mpt, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic6.mpt'))
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mpt, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic6.mpt'))
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mpr.data = mpr.data[:958] # .mpt file is incomplete
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mpr.data = mpr.data[:958] # .mpt file is incomplete
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