mirror of
https://github.com/echemdata/galvani.git
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Imported res2sqlite.py script from previous work
This commit is contained in:
Chris Kerr
430
scripts/res2sqlite.py
Executable file
430
scripts/res2sqlite.py
Executable file
@@ -0,0 +1,430 @@
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#!/usr/bin/python
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import subprocess as sp
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import sqlite3
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import sys
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import re
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import csv
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input_filename = sys.argv[1]
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if len(sys.argv) > 2:
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output_filename = sys.argv[2]
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else:
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output_filename = input_filename.replace('.res', '.res3')
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s3db = sqlite3.connect(output_filename)
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## The following scripts are adapted from the result of running
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## $ mdb-schema <result.res> oracle
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mdb_tables = ["Version_Table", "Global_Table", "Resume_Table",
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"Channel_Normal_Table", "Channel_Statistic_Table",
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"Auxiliary_Table", "Event_Table",
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"Smart_Battery_Info_Table", "Smart_Battery_Data_Table"]
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mdb_tables_text = ["Version_Table", "Global_Table", "Event_Table",
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"Smart_Battery_Info_Table"]
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mdb_tables_numeric = ["Resume_Table", "Channel_Normal_Table",
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"Channel_Statistic_Table", "Auxiliary_Table",
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"Smart_Battery_Data_Table", 'MCell_Aci_Data_Table',
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'Aux_Global_Data_Table', 'Smart_Battery_Clock_Stretch_Table']
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mdb_5_23_tables = ['MCell_Aci_Data_Table', 'Aux_Global_Data_Table',
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'Smart_Battery_Clock_Stretch_Table']
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mdb_create_scripts = {
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"Version_Table": """
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CREATE TABLE Version_Table
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(
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Version_Schema_Field TEXT,
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Version_Comments_Field TEXT
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); """,
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"Global_Table": """
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CREATE TABLE Global_Table
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(
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Test_ID INTEGER PRIMARY KEY,
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Test_Name TEXT,
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Channel_Index INTEGER,
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Start_DateTime REAL,
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DAQ_Index INTEGER,
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Channel_Type INTEGER,
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Creator TEXT,
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Comments TEXT,
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Schedule_File_Name TEXT,
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Channel_Number INTEGER,
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Mapped_Aux_Voltage_Number INTEGER,
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Mapped_Aux_Temperature_Number INTEGER,
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Mapped_Aux_Pressure_Number INTEGER,
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Mapped_Aux_PH_Number INTEGER,
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Mapped_Aux_Flow_Rate_CNumber INTEGER,
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Applications_Path TEXT,
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Log_ChanStat_Data_Flag INTEGER,
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Log_Aux_Data_Flag INTEGER,
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Log_Event_Data_Flag INTEGER,
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Log_Smart_Battery_Data_Flag INTEGER,
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Item_ID TEXT,
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-- Version 1.14 ends here, version 5.23 continues
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Mapped_Aux_Conc_CNumber INTEGER DEFAULT NULL,
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Mapped_Aux_DI_CNumber INTEGER DEFAULT NULL,
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Mapped_Aux_DO_CNumber INTEGER DEFAULT NULL
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); """,
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"Resume_Table": """
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CREATE TABLE Resume_Table
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(
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Test_ID INTEGER REFERENCES Global_Table(Test_ID),
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Step_Index INTEGER,
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Cycle_Index INTEGER,
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Channel_Status INTEGER,
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Test_Time REAL,
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Step_Time REAL,
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CCapacity REAL,
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DCapacity REAL,
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CEnergy REAL,
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DEnergy REAL,
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TC_Time1 REAL,
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TC_Time2 REAL,
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TC_Time3 REAL,
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TC_Time4 REAL,
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TC_CCapacity1 REAL,
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TC_CCapacity2 REAL,
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TC_DCapacity1 REAL,
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TC_DCapacity2 REAL,
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TC_CEnergy1 REAL,
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TC_CEnergy2 REAL,
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TC_DEnergy1 REAL,
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TC_DEnergy2 REAL,
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MV_Counter1 REAL,
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MV_Counter2 REAL,
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MV_Counter3 REAL,
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MV_Counter4 REAL,
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-- Version 1.14 ends here, version 5.23 continues
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Charge_Time REAL DEFAULT NULL,
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Discharge_Time REAL DEFAULT NULL
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); """,
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"Channel_Normal_Table": """
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CREATE TABLE Channel_Normal_Table
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(
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Test_ID INTEGER REFERENCES Global_Table(Test_ID),
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Data_Point INTEGER,
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Test_Time REAL,
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Step_Time REAL,
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DateTime REAL,
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Step_Index INTEGER,
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Cycle_Index INTEGER,
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Is_FC_Data INTEGER,
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Current REAL,
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Voltage REAL,
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Charge_Capacity REAL,
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Discharge_Capacity REAL,
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Charge_Energy REAL,
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Discharge_Energy REAL,
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"dV/dt" REAL,
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Internal_Resistance REAL,
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AC_Impedance REAL,
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ACI_Phase_Angle REAL
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); """,
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"Channel_Statistic_Table": """
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CREATE TABLE Channel_Statistic_Table
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(
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Test_ID INTEGER,
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Data_Point INTEGER,
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Vmax_On_Cycle REAL,
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-- Version 1.14 ends here, version 5.23 continues
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Charge_Time REAL DEFAULT NULL,
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Discharge_Time REAL DEFAULT NULL,
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FOREIGN KEY (Test_ID, Data_Point) REFERENCES Channel_Normal_Table (Test_ID, Data_Point)
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); """,
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"Auxiliary_Table": """
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CREATE TABLE Auxiliary_Table
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(
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Test_ID INTEGER,
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Data_Point INTEGER,
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Auxiliary_Index INTEGER,
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Data_Type INTEGER,
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X REAL,
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"dX/dt" REAL,
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FOREIGN KEY (Test_ID, Data_Point) REFERENCES Channel_Normal_Table (Test_ID, Data_Point)
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); """,
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"Event_Table": """
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CREATE TABLE Event_Table
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(
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Test_ID INTEGER REFERENCES Global_Table(Test_ID),
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DateTime REAL,
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Test_Time REAL,
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Event_Type INTEGER,
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Event_Describe TEXT
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); """,
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"Smart_Battery_Info_Table": """
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CREATE TABLE Smart_Battery_Info_Table
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(
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Test_ID INTEGER REFERENCES Global_Table(Test_ID),
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ManufacturerDate REAL,
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ManufacturerAccess TEXT,
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SpecificationInfo TEXT,
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FullChargeCapacity REAL,
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ChargingCurrent REAL,
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ChargingVoltage REAL,
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DesignCapacity REAL,
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DesignVoltage REAL,
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SerialNumber INTEGER,
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ManufacturerName TEXT,
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DeviceName TEXT,
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DeviceChemistry TEXT,
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ManufacturerData TEXT,
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-- Version 1.14 ends here, version 5.23 continues
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Frequency INTEGER DEFAULT NULL
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); """,
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"Smart_Battery_Data_Table": """
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CREATE TABLE Smart_Battery_Data_Table
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(
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Test_ID INTEGER,
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Data_Point INTEGER,
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RemainingCapacityAlarm REAL,
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RemainingTimeAlarm INTEGER,
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BatteryMode INTEGER,
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AtRate REAL,
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AtRateTimeToFull INTEGER,
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AtRateTimeToEmpty INTEGER,
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AtRateOK INTEGER,
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Temperature REAL,
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Voltage REAL,
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Current REAL,
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AverageCurrent REAL,
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MaxError INTEGER,
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RelativeStateOfCharge INTEGER,
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AbsoluteStateOfCharge INTEGER,
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RemainingCapacity REAL,
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RunTimeToEmpty INTEGER,
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AverageTimeToEmpty INTEGER,
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AverageTimeToFull INTEGER,
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BatteryStatus INTEGER,
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CycleCount INTEGER,
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-- Version 1.14 ends here, version 5.23 continues
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Pack_Status INTEGER DEFAULT NULL,
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Pack_Configuration INTEGER DEFAULT NULL,
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VCELL4 REAL DEFAULT NULL,
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VCELL3 REAL DEFAULT NULL,
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VCELL2 REAL DEFAULT NULL,
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VCELL1 REAL DEFAULT NULL,
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ManufacturerAccess TEXT DEFAULT NULL,
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FullChargeCapacity REAL DEFAULT NULL,
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BroadCast INTEGER DEFAULT NULL,
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GPIO1 INTEGER DEFAULT NULL,
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GPIO2 INTEGER DEFAULT NULL,
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OptVCELL4 REAL DEFAULT NULL,
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OptVCELL3 REAL DEFAULT NULL,
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OptVCELL2 REAL DEFAULT NULL,
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OptVCELL1 REAL DEFAULT NULL,
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OMF1 INTEGER DEFAULT NULL,
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OMF2 INTEGER DEFAULT NULL,
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OMF3 INTEGER DEFAULT NULL,
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OMF4 INTEGER DEFAULT NULL,
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OMF5 INTEGER DEFAULT NULL,
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FTEMP INTEGER DEFAULT NULL,
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STATUS INTEGER DEFAULT NULL,
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FET_TEMP INTEGER DEFAULT NULL,
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ChargingCurrent REAL DEFAULT NULL,
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ChargingVoltage REAL DEFAULT NULL,
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ManufacturerData REAL DEFAULT NULL,
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FOREIGN KEY (Test_ID, Data_Point) REFERENCES Channel_Normal_Table (Test_ID, Data_Point)
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); """,
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## The following tables are not present in version 1.14
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'MCell_Aci_Data_Table': """
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CREATE TABLE MCell_Aci_Data_Table
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(
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Test_ID INTEGER,
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Data_Point INTEGER,
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Cell_Index INTEGER,
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ACI REAL,
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Phase_Shift REAL,
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Voltage REAL,
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Current REAL,
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FOREIGN KEY (Test_ID, Data_Point) REFERENCES Channel_Normal_Table (Test_ID, Data_Point)
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);""",
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'Aux_Global_Data_Table': """
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CREATE TABLE Aux_Global_Data_Table
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(
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Channel_Index INTEGER,
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Auxiliary_Index INTEGER,
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Data_Type INTEGER,
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Nickname TEXT,
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Unit TEXT
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);""",
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'Smart_Battery_Clock_Stretch_Table': """
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CREATE TABLE Smart_Battery_Clock_Stretch_Table
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(
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Test_ID INTEGER,
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Data_Point INTEGER,
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ManufacturerAccess INTEGER,
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RemainingCapacityAlarm INTEGER,
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RemainingTimeAlarm INTEGER,
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BatteryMode INTEGER,
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AtRate INTEGER,
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AtRateTimeToFull INTEGER,
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AtRateTimeToEmpty INTEGER,
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AtRateOK INTEGER,
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Temperature INTEGER,
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Voltage INTEGER,
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Current INTEGER,
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AverageCurrent INTEGER,
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MaxError INTEGER,
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RelativeStateOfCharge INTEGER,
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AbsoluteStateOfCharge INTEGER,
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RemainingCapacity INTEGER,
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FullChargeCapacity INTEGER,
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RunTimeToEmpty INTEGER,
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AverageTimeToEmpty INTEGER,
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AverageTimeToFull INTEGER,
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ChargingCurrent INTEGER,
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ChargingVoltage INTEGER,
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BatteryStatus INTEGER,
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CycleCount INTEGER,
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DesignCapacity INTEGER,
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DesignVoltage INTEGER,
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SpecificationInfo INTEGER,
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ManufacturerDate INTEGER,
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SerialNumber INTEGER,
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ManufacturerName INTEGER,
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DeviceName INTEGER,
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DeviceChemistry INTEGER,
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ManufacturerData INTEGER,
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Pack_Status INTEGER,
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Pack_Configuration INTEGER,
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VCELL4 INTEGER,
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VCELL3 INTEGER,
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VCELL2 INTEGER,
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VCELL1 INTEGER,
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FOREIGN KEY (Test_ID, Data_Point) REFERENCES Channel_Normal_Table (Test_ID, Data_Point)
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);"""}
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mdb_create_indices = {
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"Channel_Normal_Table": """
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CREATE UNIQUE INDEX data_point_index ON Channel_Normal_Table (Test_ID, Data_Point);
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CREATE INDEX voltage_index ON Channel_Normal_Table (Test_ID, Voltage);
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CREATE INDEX test_time_index ON Channel_Normal_Table (Test_ID, Test_Time);
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"""}
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helper_table_script = """
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CREATE TEMPORARY TABLE capacity_helper(
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Test_ID INTEGER NOT NULL,
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Cycle_Index INTEGER NOT NULL,
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Charge_Capacity REAL NOT NULL,
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|
Discharge_Capacity REAL NOT NULL,
|
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|
Charge_Energy REAL NOT NULL,
|
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|
Discharge_Energy REAL NOT NULL,
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|
FOREIGN KEY (Test_ID, Cycle_Index) REFERENCES Channel_Normal_Table (Test_ID, Cycle_Index)
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);
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|
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INSERT INTO capacity_helper
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SELECT Test_ID, Cycle_Index, max(Charge_Capacity), max(Discharge_Capacity), max(Charge_Energy), max(Discharge_Energy)
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FROM Channel_Normal_Table
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GROUP BY Test_ID, Cycle_Index;
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-- ## Alternative way of selecting ##
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-- select *
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-- from Channel_Normal_Table as a join Channel_Normal_Table as b
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-- on (a.Test_ID = b.Test_ID and a.Data_Point = b.Data_Point + 1
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-- and a.Charge_Capacity < b.Charge_Capacity);
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|
|
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DROP TABLE IF EXISTS Capacity_Sum_Table;
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CREATE TABLE Capacity_Sum_Table(
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Test_ID INTEGER NOT NULL,
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|
Cycle_Index INTEGER NOT NULL,
|
||||||
|
Charge_Capacity_Sum REAL NOT NULL,
|
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|
Discharge_Capacity_Sum REAL NOT NULL,
|
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|
Charge_Energy_Sum REAL NOT NULL,
|
||||||
|
Discharge_Energy_Sum REAL NOT NULL,
|
||||||
|
FOREIGN KEY (Test_ID, Cycle_Index) REFERENCES Channel_Normal_Table (Test_ID, Cycle_Index)
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||||||
|
);
|
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|
|
||||||
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INSERT INTO Capacity_Sum_Table
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SELECT a.Test_ID, a.Cycle_Index, total(b.Charge_Capacity), total(b.Discharge_Capacity), total(b.Charge_Energy), total(b.Discharge_Energy)
|
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|
FROM capacity_helper AS a LEFT JOIN capacity_helper AS b
|
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|
ON (a.Test_ID = b.Test_ID AND a.Cycle_Index > b.Cycle_Index)
|
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GROUP BY a.Test_ID, a.Cycle_Index;
|
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|
|
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DROP TABLE capacity_helper;
|
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|
|
||||||
|
CREATE VIEW IF NOT EXISTS Capacity_View
|
||||||
|
AS SELECT Test_ID, Data_Point, Test_Time, Step_Time, DateTime,
|
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|
Step_Index, Cycle_Index, Current, Voltage, "dV/dt",
|
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|
Discharge_Capacity + Discharge_Capacity_Sum - Charge_Capacity - Charge_Capacity_Sum AS Net_Capacity,
|
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Discharge_Capacity + Discharge_Capacity_Sum + Charge_Capacity + Charge_Capacity_Sum AS Gross_Capacity,
|
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Discharge_Energy + Discharge_Energy_Sum - Charge_Energy - Charge_Energy_Sum AS Net_Energy,
|
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Discharge_Energy + Discharge_Energy_Sum + Charge_Energy + Charge_Energy_Sum AS Gross_Energy
|
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FROM Channel_Normal_Table NATURAL JOIN Capacity_Sum_Table;
|
||||||
|
"""
|
||||||
|
|
||||||
|
insert_re = re.compile(r'INSERT INTO "\w+" \([^)]+?\) VALUES \(("[^"]*"|[^")])+?\);\n', re.I)
|
||||||
|
|
||||||
|
|
||||||
|
def mdb_get_data_text(filename, table):
|
||||||
|
print "Reading %s..." % table
|
||||||
|
try:
|
||||||
|
mdb_sql = sp.Popen(['mdb-export', '-I', 'postgres', filename, table],
|
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|
bufsize=-1, stdin=None, stdout=sp.PIPE)
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|
mdb_output = mdb_sql.stdout.read()
|
||||||
|
while len(mdb_output) > 0:
|
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|
insert_match = insert_re.match(mdb_output)
|
||||||
|
s3db.execute(insert_match.group())
|
||||||
|
mdb_output = mdb_output[insert_match.end():]
|
||||||
|
s3db.commit()
|
||||||
|
except:
|
||||||
|
print "Error while importing %s" % table
|
||||||
|
print "Remaining mdb-export output: " + mdb_output
|
||||||
|
if insert_match:
|
||||||
|
print "insert_re match: " + insert_match
|
||||||
|
raise
|
||||||
|
finally:
|
||||||
|
mdb_sql.terminate()
|
||||||
|
|
||||||
|
|
||||||
|
def mdb_get_data_numeric(filename, table):
|
||||||
|
print "Reading %s..." % table
|
||||||
|
try:
|
||||||
|
mdb_sql = sp.Popen(['mdb-export', filename, table], bufsize=-1,
|
||||||
|
stdin=None, stdout=sp.PIPE)
|
||||||
|
mdb_csv = csv.reader(mdb_sql.stdout)
|
||||||
|
mdb_headers = mdb_csv.next()
|
||||||
|
quoted_headers = ['"%s"' % h for h in mdb_headers]
|
||||||
|
joined_headers = ', '.join(quoted_headers)
|
||||||
|
joined_placemarks = ', '.join(['?' for h in mdb_headers])
|
||||||
|
insert_stmt = 'INSERT INTO "{0}" ({1}) VALUES ({2});'.format(table,
|
||||||
|
joined_headers, joined_placemarks)
|
||||||
|
s3db.executemany(insert_stmt, mdb_csv)
|
||||||
|
s3db.commit()
|
||||||
|
finally:
|
||||||
|
mdb_sql.terminate()
|
||||||
|
|
||||||
|
|
||||||
|
def mdb_get_data(filename, table):
|
||||||
|
if table in mdb_tables_text:
|
||||||
|
mdb_get_data_text(filename, table)
|
||||||
|
elif table in mdb_tables_numeric:
|
||||||
|
mdb_get_data_numeric(filename, table)
|
||||||
|
else:
|
||||||
|
raise ValueError("'%s' is in neither mdb_tables_text nor mdb_tables_numeric" % table)
|
||||||
|
|
||||||
|
for table in reversed(mdb_tables + mdb_5_23_tables):
|
||||||
|
s3db.execute('DROP TABLE IF EXISTS "%s";' % table)
|
||||||
|
|
||||||
|
for table in mdb_tables:
|
||||||
|
s3db.executescript(mdb_create_scripts[table])
|
||||||
|
mdb_get_data(input_filename, table)
|
||||||
|
if table in mdb_create_indices:
|
||||||
|
print "Creating indices for %s..." % table
|
||||||
|
s3db.executescript(mdb_create_indices[table])
|
||||||
|
|
||||||
|
if (s3db.execute("SELECT Version_Schema_Field FROM Version_Table;").fetchone()[0] == "Results File 5.23"):
|
||||||
|
for table in mdb_5_23_tables:
|
||||||
|
s3db.executescript(mdb_create_scripts[table])
|
||||||
|
mdb_get_data(input_filename, table)
|
||||||
|
if table in mdb_create_indices:
|
||||||
|
s3db.executescript(mdb_create_indices[table])
|
||||||
|
|
||||||
|
print "Creating helper table for capacity and energy totals..."
|
||||||
|
s3db.executescript(helper_table_script)
|
||||||
|
|
||||||
|
print "Vacuuming database..."
|
||||||
|
s3db.executescript("VACUUM; ANALYZE;")
|
||||||
Reference in New Issue
Block a user