chris/galvani
1
0
Fork 0
mirror of https://github.com/echemdata/galvani.git synced 2025-12-14 01:15:34 +00:00
Code Issues Packages Projects Releases Wiki Activity

Use pytest.mark.parametrize to combine test cases

Browse Source
This commit is contained in:
Chris Kerr
2019-03-16 13:35:13 +01:00
parent a618f75bb6
commit d1e8616f1e
1 changed files with 37 additions and 74 deletions
Download Patch File Download Diff File Expand all files Collapse all files

111
tests/test_BioLogic.py
View File

@@ -2,7 +2,7 @@
import os.path
import re
from datetime import date, datetime
from datetime import datetime
import numpy as np
from numpy.testing import assert_array_almost_equal, assert_array_equal
@@ -44,46 +44,23 @@ def test_open_MPT_csv_fails_for_bad_file():
MPTfileCSV(os.path.join(testdata_dir, 'bio_logic1.mpr'))
def test_open_MPR1():
mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic1.mpr'))
## Check the dates as a basic test that it has been read properly
assert mpr.startdate == date(2011, 10, 29)
assert mpr.enddate == date(2011, 10, 31)
def test_open_MPR2():
mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic2.mpr'))
## Check the dates as a basic test that it has been read properly
assert mpr.startdate == date(2012, 9, 27)
assert mpr.enddate == date(2012, 9, 27)
def test_open_MPR3():
mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic3.mpr'))
## Check the dates as a basic test that it has been read properly
assert mpr.startdate == date(2013, 3, 27)
assert mpr.enddate == date(2013, 3, 27)
def test_open_MPR4():
mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic4.mpr'))
## Check the dates as a basic test that it has been read properly
assert mpr.startdate == date(2011, 11, 1)
assert mpr.enddate == date(2011, 11, 2)
def test_open_MPR5():
mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic5.mpr'))
## Check the dates as a basic test that it has been read properly
assert mpr.startdate == date(2013, 1, 28)
assert mpr.enddate == date(2013, 1, 28)
def test_open_MPR6():
mpr = MPRfile(os.path.join(testdata_dir, 'bio_logic6.mpr'))
## Check the dates as a basic test that it has been read properly
assert mpr.startdate == date(2012, 9, 11)
## no end date because no VMP LOG module
@pytest.mark.parametrize('filename, startdate, enddate', [
('bio_logic1.mpr', '2011-10-29', '2011-10-31'),
('bio_logic2.mpr', '2012-09-27', '2012-09-27'),
('bio_logic3.mpr', '2013-03-27', '2013-03-27'),
('bio_logic4.mpr', '2011-11-01', '2011-11-02'),
('bio_logic5.mpr', '2013-01-28', '2013-01-28'),
# bio_logic6.mpr has no end date because it does not have a VMP LOG module
('bio_logic6.mpr', '2012-09-11', None),
])
def test_MPR_dates(filename, startdate, enddate):
"""Check that the start and end dates in .mpr files are read correctly."""
mpr = MPRfile(os.path.join(testdata_dir, filename))
assert mpr.startdate.strftime('%Y-%m-%d') == startdate
if enddate:
mpr.enddate.strftime('%Y-%m-%d') == enddate
else:
assert not hasattr(mpr, 'enddate')
def test_open_MPR_fails_for_bad_file():
@@ -146,25 +123,26 @@ def assert_MPR_matches_MPT(mpr, mpt, comments):
pass
def test_MPR1_matches_MPT1():
mpr1 = MPRfile(os.path.join(testdata_dir, 'bio_logic1.mpr'))
mpt1, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic1.mpt'))
assert_MPR_matches_MPT(mpr1, mpt1, comments)
@pytest.mark.parametrize('basename', [
'bio_logic1',
'bio_logic2',
# No bio_logic3.mpt file
'bio_logic4',
# bio_logic5 and bio_logic6 are special cases
'CV_C01',
'121_CA_455nm_6V_30min_C01',
])
def test_MPR_matches_MPT(basename):
"""Check the MPR parser against the MPT parser.
def test_MPR2_matches_MPT2():
mpr2 = MPRfile(os.path.join(testdata_dir, 'bio_logic2.mpr'))
mpt2, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic2.mpt'))
assert_MPR_matches_MPT(mpr2, mpt2, comments)
## No bio_logic3.mpt file
def test_MPR4_matches_MPT4():
mpr4 = MPRfile(os.path.join(testdata_dir, 'bio_logic4.mpr'))
mpt4, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic4.mpt'))
assert_MPR_matches_MPT(mpr4, mpt4, comments)
Load a binary .mpr file and a text .mpt file which should contain
exactly the same data. Check that the loaded data actually match.
"""
binpath = os.path.join(testdata_dir, basename + '.mpr')
txtpath = os.path.join(testdata_dir, basename + '.mpt')
mpr = MPRfile(binpath)
mpt, comments = MPTfile(txtpath)
assert_MPR_matches_MPT(mpr, mpt, comments)
def test_MPR5_matches_MPT5():
@@ -180,18 +158,3 @@ def test_MPR6_matches_MPT6():
mpt, comments = MPTfile(os.path.join(testdata_dir, 'bio_logic6.mpt'))
mpr.data = mpr.data[:958] # .mpt file is incomplete
assert_MPR_matches_MPT(mpr, mpt, comments)
## Tests for issue #1 -- new dtypes ##
def test_CV_C01():
mpr = MPRfile(os.path.join(testdata_dir, 'CV_C01.mpr'))
mpt, comments = MPTfile(os.path.join(testdata_dir, 'CV_C01.mpt'))
assert_MPR_matches_MPT(mpr, mpt, comments)
def test_CA_455nm():
mpr = MPRfile(os.path.join(testdata_dir, '121_CA_455nm_6V_30min_C01.mpr'))
mpt, comments = MPTfile(os.path.join(testdata_dir, '121_CA_455nm_6V_30min_C01.mpt'))
assert_MPR_matches_MPT(mpr, mpt, comments)